dragon roost island-zoras waterfall/eastern death mountain top:
As almost everyone knows, ritos are the evolution form of zoras, and they took place in eastern death mountain top (were zoras domain was in OoT) (dragon roost island after the flood).
The ritos (after the unflood) evolved in what river zora's are now, they aren't too frienship as we know (they atack you) and they live in zora's waterfall.
windfall island-western death mountain:
The people from the market went to death mountain top and they build a small tomn on a island to keep them safe (i doesnt have an explanation of were the gorons went).
tower of gods-hyrule castle:
The portal in the tower heads streight down to hyrule castle.
kakariko village-great-fish island:
Just because they fix geographicly.
outset island-desert of mystery:
Only because they fix geographicly.......ohhhh and maybe the temple there is the earth temple in the headstone island (next to outset).
swamp-two aye reef:
They fix geographicly.
lake hylia-boating cruise:
There's nothin' more to say than: they fix geographicly.
Here how i think they should fix:
my zelda top list:
1) MM 2)AlttP 3)TWW 4)OoT 5)FSA 6)TMC 7)LA