Well, if he
had mentioned anything about FSS going in between, then we would pretty much have most of the timeline confirmed, which is something they apparently don't want us to know about because it's "top secret" info for whatever reason. He never really confirms or denies any such placement in those interviews (even when specifically asked about it), so it's still pretty vague at best, which just might be exactly what he wants it to be.
I'm also really starting to get the impression that they don't even care about the 2D games (at least story-wise) anymore. I mean, they pretty much ignored the entire
AoL backstory, as well as the
OoT-
AlttP connection that they had going ever since WW came out.
I think it's just best to wait until we have played
SS.