Clock Town. So many NPCs, so much backstory... and ah, awesome. But then again, I do have a bit of a bias towards
MM. So excluding
MM, my favourite towns would have to be Windfall Island (lots of stuff to do!) from WW, and Kakariko Village from
OoT.
I like how Kakariko Village always seemed kind of peaceful, even at the time when trouble was brewing on Death Mountain and the castle town had been completely ransacked.
I wasn't too keen on Kakariko Village in
TP; it seemed too... American-Indian oriented? It didn't really seem to fit with the series at all... Was a bit strange. I dunno.