1. Twilight Princess: I love me my
TP (toilet paper, too). This game got me into the series after
ALttP failed to so five years earlier in 2002 (mostly because of the high difficulty). The story was absolutely riveting (holy crap, it got frakking dark at times), the characters and their interactions were deep, the boss battles were some of the series's best, and the game's world was pweeeety! I have never felt more immersed in a game's universe and plot. It is like an interactive epic Hollywood blockbuster!
2. Majora's Mask: Okay, I haven't even finished this game yet, and it's in the running to beat
TP for the top spot in my best Zelda games list; if it were to do so, it would become my favorite video game of all time, since that is what
TP is now! This game is even darker than
TP. It is also the only video game to successfully give me a full-fledged nightmare (and this nightmare was practically me being in the game, it was so accurate!). That means that it has had a significant impact on me! The game's plot is terrifying, the characters are heart-wrenching, and the whole thing was done so well that it gets into your head and makes you feel completely and utterly helpless to save people from a gruesome, final death. It is so dag nab depressing! But if there is any proof of the immense power of video games, this is it. The dungeon design was not particularly impressive, however (though I haven't gotten to the flipping part of Stone Tower Temple yet).
3. Skyward Sword: Ah, yes. The newbie. The only reasons why this is on my top three games list are as follows: 1) the controls make this game have the greatest, most immerse combat system of any video game I have ever played, 2) the characters are some of the deepest, most lovable in the series, 3) the dungeons in this game are my favorite dungeons in the series, and 4) LORD FRAKKING GHIRAHIM. Ghirahim is the greatest villain I have ever encountered in video games (except, perhaps, for Pokémon Black & White Versions' Team Plasma); Ghirahim has a distinct personality, is more sadistic (and simultaneously "filled with rainbows") than any previous Zelda villain, is lovable (to hate), and is kinda shmexy!