In the sense of just playing the game, I couldn't care less if it was with the cartridge, in virtual console, or even in my PC through emulation.
But nothing beats owning a physical copy of the game, even if you don't use it for playing.
I
love my old
OoT cartridge and I wouldn't change it for anything, but I never use it, as I prefer playing it on the Collectors Edition disk, or on emulator to get better graphics if I can get a good enough USB controller.