1. Final Fantasy VII
2. Final Fantasy VIII

You can see how much of an open minded individual I am eh? What can I say? These two games had a major impact on my young pre-teen imagination. The stories and characters still remain my favorites out of every single game I've ever played. Also, I love both the Materia and Junction systems respectivly.
I could compile a list of great S-E games, but when it comes down to it none are as good as these in my opinion.

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Thanks to Kynnella for the sig.