A word of caution, my friend.

Make sure, when your writing for these separate chapters, that the characters, and lack thereof, are accounted for.

Zoras: Mikua's already dead, and, most likely, the pirates have all of the Zora eggs.

Romani Ranch: Romani is gone; without Link's help, she was kidnapped by the "Ghost aliens" from night of day 1. At that point, it's only Cremia on the Ranch, though she may have fled as well.

Clock Town: Most of everyone is gone. Muso, or whatever his name is (the head of the construction workers), is standing outside of the Clock Tower waiting for the Festival to begin (which it never will). Anju has most likely fled Clock Town as well...

I don't know your plans on "Redemption" and "Farewell" so I can't speak to those...