Fish, you should have enabled us to vote more than one choice, because
TP and
TMC are both my favorites, and others could have more than one favorite. :/
I voted
TP anyway. It's dark, has great music, memorable characters (especially Louise!), awesome dungeons and bosses (except Argorok and his dungeon, which both suck), and unique weapons while still keeping the classics like the bow! The only downsides for me are that there's too many rupees and the game isn't hard enough.
W00t first post!