I played the Game Cube version first and foremost, and I had a lot of fun with it. It was a familiar console, because I have played both Majora's Mask and Ocarina of Time on it as well as the 64, and I don't think that I would like needing to learn an entire new set of controls. I have played it on the Wii, and I had a lot of fun. That could, however, be because it was at my friend's birthday party and I was hyped up on sugar. I can't give you a good comparison, but like many others have said, it's really up to you.