In Wind Waker, the Triforce of Courage is said to have been shattered since the Hero of Time left. Thus, the ToC has been shattered since the end of OoT.
How did the Triforce go from it's state at the end of OoT [Zelda=ToW, Ganondorf=ToP, ToC is shattered] to it's state in aLttP [Complete and in the Sacred Realm] then to Wind Waker [ToW=Zelda, ToP=Ganon, ToC is shattered] ?

If the ToC has been shattered since OoT, then no games involving the Triforce can come in between OoT and WW.
Seeing as in game evidence such as the state of the Triforce and Ganon talking about the hero of time [and not the Hero of Legends, aLttP Link], and seeing as the directors themselves say that the OoT adult ending leads into WW, there should be no doubt that OoT-WW is a segment of the timeline with no [existing] games separating them.

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Voted as Best Zelda Theorist in the Summer '08 Awards. Thank you to all who voted, and to all who inspired me along the way!