I have to say The Two Thrones as the best one. It had the right soundtrack for the era and the atmosphere of the game had a true "persian" kind of feel. It was a real "Prince of Persia" game if you ask me.

The Sand of Time was great, but not to my liking because of the graphics (yes, I'm very picky with the graphics in this case), and as well as the limit of swords; you can't change your weapons, and you can't pick them up. I didn't like that at all.

Warrior Within was also a great game, but it had too much of a dark atmosphere to it. It didn't seem to me like a "Prince of Persia" game at all.

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Thanks to insaney for this awesome signature!