Ganon died in TP,TWW,ALTTP,LOZ and if you wish,OOX as well,but that was merely a shell...
As for your Links..i some flaws there.

The following share the same link:
-OOT/MM
-ALTTP/LA
-LOZ/AOL
-OOS/OOA
-FS/FSA
-TWW/PH

The following have their own Link
-TP
-TMC

Also,does your timeline flow in the order you mentioned your games????
Please make that clearer so people can comment better on your timeline...

__________________
OoT-TWW/PH-TMC-FS/FSA-ALttP/LA-LoZ/AoL-OoS/OoA
OoT/MM - TP